Quick update:
Clutch locking tool arrived. Rotor nut is now torqued at 70ft lb.
Electrical gremlin has re-surfaced. Bike started but cuts out as soon as I give it any throttle. On inspection, twisting the throttle seems to kill the electrics. Must be a loose connection somewhere in the bar electrics. Weird one. I'll have another look at the bar electrics.
Stator won't mount on the 3 new stator mount studs. Only goes on the 2 studs nearest the front of the bike, not the 3rd and uppermost stud. I replaced all 3 studs with brand new (twice), and none are overtightened so it seems that the threads are very slightly misaligned. If I mount the stator on 2 studs, then introduce the 3rd stud it goes in OK but I'm left with a big stator gap at one side, and an almost touching gap on the other side. I'm guessing the top right stud thread has been cross-threaded at some point in it's life, and re-tapped, or is still cross threaded. I'm tempted to bend the other 2 slightly to meet it, and hopefully correct the stator gap but that doesn't feel very scientific at all. Bit stuck on this one.