I been watching this thread and your problem, one thing you say you been idling the bike a lot while working on it or what, the ALT won't charge the battery when idling and idling to longocould have a affect to the spark plplugs.
lots of things could be the cause of your problem But you got to go through things one at a time to find the problem, first of all I be tearing down the cards and replace new needles and jets (a carb rebuild kit needed) soak the all the carbs bits ( I soak mine in vinegar work well) make sure the floats are filling up with fluids, if they have petrol in them when you pull them down replace them, after cleaning the carbs make sure all passages have no blockages, refit carbs and see if that was the problem, if no then I be going through the electrics, starting with coils and leads, also new spark plugs, then EI be the next thing to check, also do a load test on your battery as even new batteries can fail, coils can work good when first fired up but as the get warm or very hot could fail,go through the plug leads, replace if nesasry and if still problem go through wiring as old wiring can be brittle from age and cold and hot weather and of course replace any old connections that are showing age, moisture is the biggest killer of electrical connections.
Remember your bike is over 50 years old and not knowing the history of the bike, where it's been parked up or stored can cause problems as you found out one day running fine the next day it's having problems, just be patient and go through things one at a time, and if you get frustrated just walk away and think about don't get angry, find someone close who knows how to do thing, never be afraid to ask as you have been doing here, but I be starting to pull those carbs down first, you never know could be just something simple to fix and looking right at you and make sure the needle clip is seating right under the spring in the slide, and make sure the choke is right, myself removed my chokes over 40 years ago as I got sick of people fooling around with the lever when parked anywhere, been caught out with that one a few times.
Anyway take your time and just work your way through things, you get there and sort it out and you get to know your bike as well, good luck.
Ashley